Scaffold Ga0070741

Basic Information
Taxon OID	3300005529 Open in IMG/M
Scaffold ID	Ga0070741_10000096 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	326167
Total Scaffold Genes	314 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	235 (74.84%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

326167

Total Scaffold Genes

314 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

235 (74.84%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002494	Metagenome / Metatranscriptome	554	Y
F013909	Metagenome / Metatranscriptome	267	Y
F021663	Metagenome	218	Y
F082297	Metagenome	113	Y
F088447	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_10000096146	F082297	AGGAGG	MGKSGPKLSEAKAEKLRKGIRAIIKANKDLQAAVNGLKKSSKAKDNKARLRSAISKVIVRNPLLQRAAKDLFNKSR*
Ga0070741_10000096186	F013909	GGA	MTRIEREGRAGKFSLLPLLIAGRTLSAEIRRALRENRLREAAADIMREYGLSCVEVEHLLDFDACAD*
Ga0070741_10000096201	F088447	AGGAGG	MNSWELIFRQSRVNDGIYYGDRLPGQNWQWPQGTWLQTRLRYLRRGLGRKSAGAPEADGSRTAG*
Ga0070741_10000096244	F021663	GGAG	MEKTTSYAVEKSPGEAERDAAARDGADVRRFARDLRALGQALEKFQFSAFDLELKSGRYIVTGRVATAERIKFSFARFLREIFQGAVPRTTLTYSHNQMDLTFTPDEIQQFDARGKGKRQDPGKMPDPYSISQILRGAGSYLDNREAARLSAISLRGKWVTVAYENPDGRIEQAQQDLEYFYDYWVKMYMRRSNRAKLPAPSEPTLFVTWEGMRHTHRVGDVPG*
Ga0070741_10000096270	F002494	N/A	MPSPIKKIAPSKVPGPAERAALDEWGYPSGMVWCPMKMSGMALMKCAELQRQLGCGSAGQFRTIARTRPGQAPCFWPWLRRGRECPQRADDRAVRELRLALSPLKLVEKSRKNPRAYRCSGCGDRKAFGARLCRRCWRASVVKPQAGNSKRSRTR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070741_10000096

Overview

Ecosystem & Geography

Associated Families

Sequences