Scaffold Ga0070741_10000001

Overview

Basic Information

• Taxon OID: 3300005529
• Scaffold ID: Ga0070741_10000001
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605437
• Total Scaffold Genes: 1580
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 557 (35.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000365	Metagenome / Metatranscriptome	1227	Y
F007987	Metagenome / Metatranscriptome	341	Y
F013797	Metagenome	268	Y
F027800	Metagenome	193	Y
F047601	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070741_100000011	F000365	GAG	MKNKKDAPAGEQNSQRLRKKDKMIRLDDLIPKKDVLGGRQLFFGASEIQSTTNPTQES*
Ga0070741_100000011199	F047601	N/A	MTENELKKLVNEAVSLHRALTTYGERLKTLKGELIREAKRHKEDFIITDGGGSRWTASGTDGCIARVNFPAPALLSHIATEDETFDKVLALAGESLDDLFESRHYLKPAADFRDKAADALPRRTALQLIELCQVECSPRVSFETAETKTKER*
Ga0070741_100000011200	F007987	GGA	MTKQATRNRMEAVENGSFTSTTTIAALLFLAAKFPHRQFNSAELSVLSGIGRTAMSQIKNASDTPFSLGKCTLQRLDAWLAKHPGYKQD*
Ga0070741_100000011388	F013797	N/A	VNEPNETGGKSFFPSGAIFFFVLLLIFYALLWLLIYWIMIARS*
Ga0070741_10000001749	F027800	AGGAG	MKTHFHFTKSVWRGAVAFLIMASAASLFAGHTEFVTQVAGPVTVGIHGNEPLVTTAPDGTIYISALQHLYRSTNAGATWTELAGPIYASSLNLNSDSSISVDPNGRLYFTFDYPYAGTTAVCTSDDRGDTFNCDPAVVPGGTDRMWVLAPTTTSAFEVTNQGLYETAFLQSTDGGSTWTPHSLGAGLLEPQTGPLLQQPGSTDVLQITKIYGTLPQETPELKLYVYHPNTTGSIISDVRSTGLPLPLALPSAALARDGQLWVSSEEANAAGGKQVVLARSANSGATWMRLPPIPGTTTGTAIFSWVAAGTPGHVGVIYYYTPDNGDPGALTTSNWSLMWAESFNATSSMPTWNVRTIESNIHNGPLCIAASCSGADRFAGDFISAVIDAKDVAHLSWMKQDIDPATNLATGAISIRYAKVSRVAEAKDNKKRRH*