Scaffold Ga0068876_10345426

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10345426
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 837
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001307	Metagenome / Metatranscriptome	726	Y
F001998	Metagenome / Metatranscriptome	606	Y
F071988	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_103454261	F071988	N/A	MVEAVEPIKLHPLYILYIYKVFEHLKQLWMVIWQHTHTVTTTE
Ga0068876_103454262	F000211	N/A	MSYTYKVFEHLKQLWMGIWQHIHTFTTTELSPDLGELDEILDSVSVEMIPLCYG*
Ga0068876_103454263	F001998	N/A	MVEAVEPFKLHPTSMPYIYKVFEHLKQLWMGIWQHIYAIITTEFSPDLGELVEILDDVSVEMIPLCYG*
Ga0068876_103454264	F001998	N/A	MVEAVEPFKLHPTSMSYIYKVFEHFKQLWMGIWQHIYAIITMEFSPDLGELAEILDDVSVEMIPLRYG*
Ga0068876_103454265	F001307	N/A	IWQHTHTVTTTELSPDLGELAEILDDVSVEMIPALRYG*