NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10278643

Scaffold Ga0068876_10278643


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10278643 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)953
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F024786Metagenome / Metatranscriptome204Y
F043790Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_102786432F024786GGAGLPVYRVFGNKYQNYYTILDAADEFQAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSYNVQLNI*
Ga0068876_102786433F001019AGGAGGMSNYEPSLEILEVNYSCSPGGIDTFEVYDKSEIEPVSLPIYETESLTEAVMFCYNLGKDFIVRTYAEWESRELASL*
Ga0068876_102786434F000441AGGAGGMQQTDKYINEQLSKAQALLWSGSLHEVDEAHNIIAKLINDRMSEKEGTNV*
Ga0068876_102786435F043790N/AWSFDVLRSIYENNRFEDLAVNDFVDEAVPAGITLKQIFDKFWEDADGIGISMDLGDEIIDETIRDWMRDNDFLVALDEDGWLDDEEEEDATD*

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