Basic Information | |
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Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10278643 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 953 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F001019 | Metagenome / Metatranscriptome | 804 | Y |
F024786 | Metagenome / Metatranscriptome | 204 | Y |
F043790 | Metagenome / Metatranscriptome | 155 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068876_102786432 | F024786 | GGAG | LPVYRVFGNKYQNYYTILDAADEFQAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSYNVQLNI* |
Ga0068876_102786433 | F001019 | AGGAGG | MSNYEPSLEILEVNYSCSPGGIDTFEVYDKSEIEPVSLPIYETESLTEAVMFCYNLGKDFIVRTYAEWESRELASL* |
Ga0068876_102786434 | F000441 | AGGAGG | MQQTDKYINEQLSKAQALLWSGSLHEVDEAHNIIAKLINDRMSEKEGTNV* |
Ga0068876_102786435 | F043790 | N/A | WSFDVLRSIYENNRFEDLAVNDFVDEAVPAGITLKQIFDKFWEDADGIGISMDLGDEIIDETIRDWMRDNDFLVALDEDGWLDDEEEEDATD* |
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