Scaffold Ga0068876_10278643

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10278643
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 953
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F024786	Metagenome / Metatranscriptome	204	Y
F043790	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_102786432	F024786	GGAG	LPVYRVFGNKYQNYYTILDAADEFQAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSYNVQLNI*
Ga0068876_102786433	F001019	AGGAGG	MSNYEPSLEILEVNYSCSPGGIDTFEVYDKSEIEPVSLPIYETESLTEAVMFCYNLGKDFIVRTYAEWESRELASL*
Ga0068876_102786434	F000441	AGGAGG	MQQTDKYINEQLSKAQALLWSGSLHEVDEAHNIIAKLINDRMSEKEGTNV*
Ga0068876_102786435	F043790	N/A	WSFDVLRSIYENNRFEDLAVNDFVDEAVPAGITLKQIFDKFWEDADGIGISMDLGDEIIDETIRDWMRDNDFLVALDEDGWLDDEEEEDATD*