Scaffold Ga0068876_10104355

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10104355
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1688
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025487	Metagenome	201	Y
F067537	Metagenome / Metatranscriptome	125	N
F077223	Metagenome / Metatranscriptome	117	N
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_101043551	F077223	N/A	AAFKSIIPEFHAYADEDKRYNIGATWTDDQGLRDYHNLEMRYVRNSEKLALQGEPQPDGSWKYVEPNGTTHVISAERARHFMETTQAHATMMCGMLERLKEAGLYDKFIDTDATPA*
Ga0068876_101043552	F025487	GGGGG	MAHDSIDLDLVDKTIALIPEHGWTQVRQAIVTALVDNMPGCVIQHLTGSYDDFDCAEKILYNYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQQ*
Ga0068876_101043554	F067537	N/A	MTTKRQFDYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGASQKFLLVRWDHLPSPTEHATARICPVSELERLTKEVLVPGE*
Ga0068876_101043555	F087066	N/A	MTENQIQFLRGCCATILAFAATGLIAAIFLSPDEPKNNSKFEVLDQYEGCLVIRYTDPTSRWHYFLKCS*