Basic Information | |
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Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10104355 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1688 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025487 | Metagenome | 201 | Y |
F067537 | Metagenome / Metatranscriptome | 125 | N |
F077223 | Metagenome / Metatranscriptome | 117 | N |
F087066 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068876_101043551 | F077223 | N/A | AAFKSIIPEFHAYADEDKRYNIGATWTDDQGLRDYHNLEMRYVRNSEKLALQGEPQPDGSWKYVEPNGTTHVISAERARHFMETTQAHATMMCGMLERLKEAGLYDKFIDTDATPA* |
Ga0068876_101043552 | F025487 | GGGGG | MAHDSIDLDLVDKTIALIPEHGWTQVRQAIVTALVDNMPGCVIQHLTGSYDDFDCAEKILYNYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQQ* |
Ga0068876_101043554 | F067537 | N/A | MTTKRQFDYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGASQKFLLVRWDHLPSPTEHATARICPVSELERLTKEVLVPGE* |
Ga0068876_101043555 | F087066 | N/A | MTENQIQFLRGCCATILAFAATGLIAAIFLSPDEPKNNSKFEVLDQYEGCLVIRYTDPTSRWHYFLKCS* |
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