Scaffold Ga0068876_10062533

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10062533
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2253
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009141	Metagenome / Metatranscriptome	322	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022190	Metagenome / Metatranscriptome	215	Y
F090297	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100625333	F021513	N/A	MSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQALALPTTEKAVRTPSVHKAKSQSKTHKSSRKGRRGVAVLTEAKVLEIKRQLAAGGKSIAKIARDFGVHITTINCIKSGKTWKHVALQQPAPVVVVD*
Ga0068876_100625334	F009141	N/A	MVPFYRSYLLGGKMVYLDKLSELSDGELNMLNIETMASLEEARRDYEAVENKQSEEGGSVYRRLKVAGYFQAAIKLELQN*
Ga0068876_100625336	F022190	AGGAGG	MSQVQSIEELRFEGDHLVVDAVVDDMVVRYAQTAFEPAEWGPALCRGTLYFSDEDLIPATDAELRAMLTDRVDDWTPLDTSDWDV*
Ga0068876_100625337	F090297	N/A	MYEPFQAKVDNLNLSPWYYAVSWARHSLQAQVNRYSELGLNTAYDEKQVAQLLELEQFLKMSWDQWMESVLPSETAQEVK*