Scaffold Ga0068876_10035592

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10035592
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3085
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022648	Metagenome / Metatranscriptome	213	Y
F029334	Metagenome	188	Y
F032651	Metagenome / Metatranscriptome	179	Y
F047018	Metagenome / Metatranscriptome	150	Y
F093244	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1003559211	F022648	AGGAG	MAIVHNVQVYPVYAGHVNDHKVIREEEFKTREDAIMWARFYNQHRDNWNINGWLENGNGFEAVYTGAIDTETGENL*
Ga0068876_100355922	F093244	AGGAG	MKSSVAMFVFITGLLMTFGAVGGIEVSVTNMELMSSMVVAIVGLLTMYCGVLGLKGADYYDAG*
Ga0068876_100355924	F032651	AGGAG	VKVKVINIEDGGFYKDAYVSGNCVKVTLRRGKAVATCEQILIWDEEYAEDCFEDWRECALAGEAGYTYTA*
Ga0068876_100355926	F029334	AGGAG	MKELETKQAGQFAFAAVMDAQRQNSNNKSTYTQEQVRKALTVRDLLDSAFSYKTLYINYRKKFIAVKAEGARARDSMAREVVALFESNGYDVAQSPQGLIVRIAK*
Ga0068876_100355929	F047018	AGGAG	MLKLIGIVAVVYIGWAIGLIQTILLVTAGLLTTIAGV*