Scaffold Ga0068876_10034850

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10034850
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3121
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F010525	Metagenome / Metatranscriptome	302	Y
F081279	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100348501	F010525	GGA	MYTLQFLAPFVAGLCFENFMLKQGELCNVRDYPPNVVKYDKPNPEYACYRDGIFYPRCKDLEN
Ga0068876_1003485010	F004546	GAG	MDYTEEFPFDQFPWKLVYQDGKEKRKCYFQTEEHRKKHIDRYNLKKKDIKLSYKYDD*
Ga0068876_100348506	F081279	GGA	MKQDPYWFFKKWGFPDSLPADDIYDRLTQLEDRVKVLEEENIGLTNALYEMENALEARIDILTCELWIKKDV*