Scaffold Ga0068876_10026787

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10026787
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3610
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F028786	Metagenome / Metatranscriptome	190	N
F082594	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100267871	F082594	AGGGGG	MKPQDVYKLEQVLRLSISQDLLNKASNFHNQDDMEEARKIVEKK
Ga0068876_100267875	F014609	GAG	MINELVGIIGLLITILVLVIKATAEIIKMKSQLFPNGGSSLSDKVTRLQLDVVKIRSTIDSINSQLGKKPTRKR*
Ga0068876_100267876	F018353	AGG	MSKPKAKKQTIELPDVMASELVKVINTAHEDGKLITGFVCLLETFDGRKKSIKIQANADMPQHSVFGIINFAAEKYQFTVSPEEDDDDFYDPEWFDGQ*
Ga0068876_100267878	F028786	AGCAGG	MNLLQSFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKVK*
Ga0068876_100267879	F001805	N/A	QLHIQVLLLYLVLVRQENCQFMASTNKIMVGIDDQVIELKGADKEAFIADREATAETQRLLEAEYKAKQEARESAIKKLAEIAGLTKDELASIL*