NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10026787

Scaffold Ga0068876_10026787


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10026787 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3610
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001805Metagenome / Metatranscriptome631Y
F014609Metagenome261Y
F018353Metagenome235N
F028786Metagenome / Metatranscriptome190N
F082594Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100267871F082594AGGGGGMKPQDVYKLEQVLRLSISQDLLNKASNFHNQDDMEEARKIVEKK
Ga0068876_100267875F014609GAGMINELVGIIGLLITILVLVIKATAEIIKMKSQLFPNGGSSLSDKVTRLQLDVVKIRSTIDSINSQLGKKPTRKR*
Ga0068876_100267876F018353AGGMSKPKAKKQTIELPDVMASELVKVINTAHEDGKLITGFVCLLETFDGRKKSIKIQANADMPQHSVFGIINFAAEKYQFTVSPEEDDDDFYDPEWFDGQ*
Ga0068876_100267878F028786AGCAGGMNLLQSFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKVK*
Ga0068876_100267879F001805N/AQLHIQVLLLYLVLVRQENCQFMASTNKIMVGIDDQVIELKGADKEAFIADREATAETQRLLEAEYKAKQEARESAIKKLAEIAGLTKDELASIL*

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