Scaffold Ga0068876_10023558

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10023558
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3874
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F010684	Metagenome / Metatranscriptome	300	Y
F014250	Metagenome / Metatranscriptome	264	Y
F015988	Metagenome / Metatranscriptome	250	Y
F023106	Metagenome / Metatranscriptome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100235581	F001507	N/A	MTQTYKPYTINELVCEIYEDNLSHFEFEENMGGEPCDCNLHITMETIVKYWGE*
Ga0068876_1002355811	F023106	AGGAGG	MRIRRILTAEEKVANKLGNEISDLRVDLELVGEYLAKSQPNVVYNRLQVIAESAKETKEGTNYAHNNF*
Ga0068876_100235583	F015988	N/A	MNTLIEYLKIHAISLEQDLEDISNQMESLDPASKDYTELDFEYNHVSGQSLATRHILSVAEGMIE*
Ga0068876_100235584	F014250	GAGG	MITTDLAPHLQKLVDLGESGTDILHGELKNLMYEAEKEYNAAVEQEEYTEEAMDSMERKYWEGQMDALSWVYALTYQLSFAISDRTKKNA*
Ga0068876_100235588	F010684	AGG	MNEYTVEVIFEPTGDYMHFKYEAESDNEADLCNEILNQLSIVSFKEQE*