Scaffold Ga0068876_10017822

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10017822
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4516
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053078	Metagenome	141	N
F078653	Metagenome	116	N
F091586	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100178221	F078653	GAGG	MPKHPTKPDRYAALEAYVAACLPVLNLGNWKVTILTDVAPEDRYADIEPNDQAQTANLRVGNLFWAQKPHEQRLTIVHELIHLHLCRLDQTVDRLEPVLGSAAWAPWAAVYEDVYERATDAIAEILAPQVDLPSV*
Ga0068876_100178222	F053078	AGGAGG	MRLDSLLSWFRDHQDSLPIVIHRLNHMDDGGVPAWTGEFSTYLDHAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKRCRAKQGEPKPHEIGVALIATRGDLTASQEWLMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVTDAQASDQA*
Ga0068876_100178224	F091586	N/A	MECRKSESQSCHSRKREAFVIQVRSINGAHLKRILSVNFPRLYAVAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLYGEIPPSGWRTVEARGLHTITPTEDPNAPEAQALDLSVSADANWVEIAQASVMAVAEKLHGHAMGEWVGHPEMLDVDGNPLDLVTECRRCGMLVAIDAGLREVNGFAWRAFCGSDNLWKGAR*