Scaffold Ga0068876_10017561

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10017561
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4558
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F002515	Metagenome / Metatranscriptome	552	Y
F006385	Metagenome / Metatranscriptome	374	Y
F021757	Metagenome	217	Y
F025743	Metagenome	200	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1001756111	F000808	AGGAG	MEYNYSLTTSYDGELVNTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGNVSVK*
Ga0068876_1001756113	F025743	GAGG	MTATITNMKFVYADLLTPSQLMEGDLINIDNDIVEVISVVDDATGDNYTITHKNEYDEVEETLCTYEDMFKLYVFIDDDE*
Ga0068876_1001756114	F002515	N/A	MKKTPEELRRLMELRRSNAASSVPNKKKYNRKKCQSLMLELKKESE*
Ga0068876_100175612	F048982	AGGAG	MSIELQDVLKVCRQIRGNDRDSGTHYLLGYLWANTPEKEQIRIAKLFNKDLEEMENNK*
Ga0068876_100175618	F021757	AGGTGG	MTRKDYVAVAEILSSYKDLIGDEFLFEDLVEDFSSFFAEDNPNFKFDKFREACMK*
Ga0068876_100175619	F006385	GAGG	MILDTGTLIGITIALAGSLFVMGMFWKQNIAQQKEIRRLQIALRSERLKK*