Scaffold Ga0068876_10015786

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10015786
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4840
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F009126	Metagenome / Metatranscriptome	322	N
F018160	Metagenome / Metatranscriptome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1001578611	F009126	N/A	MSITVLSGSPLVATPVYNKMLYKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPVVTGATTTVSGVMAFAGNLEQLELAGWSGGLYFPAGGGFADAV
Ga0068876_100157868	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGYFPKKYDGASHQERAELLKAHAKIGDVWGVVSFFLLSSESYLKVLSDYSRHLTKGMQAP*
Ga0068876_100157869	F018160	N/A	MVVWRMANKDVLKFEAIFAMKAVEFLNYALLIHDILEAERMEAERMRRK*