Scaffold Ga0068876_10010134

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10010134
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6240
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024768	Metagenome / Metatranscriptome	204	Y
F038911	Metagenome / Metatranscriptome	165	Y
F076003	Metagenome / Metatranscriptome	118	Y
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1001013414	F038911	N/A	MSVEKVKFVTVTRTICPRTQIHYLDAVSDDGMHWYAEMTPHQEKWLTYQKLWTRDPQQPYPFN*
Ga0068876_1001013416	F101046	N/A	MQVSSYGNDLLLEAAELRAILKGELGFRKCPDCQGEGESWTLHYVLKDDPDQSNEQFKEVGAQFAADFDEDNLPPEYSWGECHLYECETCHSVGYIPVEQW*
Ga0068876_1001013417	F024768	GGAG	MDYETEIIDGHKAIVRHFFKAHEIQVGSRWIGSSGGIVTVEGFNSYGDTDPWIEVVYSWDENGVKRTNDKDVFSFQCRYCLIVED*
Ga0068876_1001013420	F076003	GGAG	MKLTAHELAVIIDTINHSLMISNWSGYYTQKSRENVRDLIATIMDEMSVEVITDKPNFTIDADAG