Scaffold Ga0068876_10007701

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10007701
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7263
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008402	Metagenome / Metatranscriptome	334	Y
F008943	Metagenome / Metatranscriptome	325	Y
F030059	Metagenome / Metatranscriptome	186	Y
F049575	Metagenome / Metatranscriptome	146	Y
F072267	Metagenome / Metatranscriptome	121	Y
F091921	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100077011	F008402	GAGG	MTIEITNQVRIQEHSDYWYTAEDIHLDVGCEGFTVSYWEFNKEKGDKRIQHICMNKEEALAIADAIYKLFKN*
Ga0068876_100077012	F049575	GGAG	MTKLSAADLMVIHNTLYKSLSVVGNSIWTQETRERVMDKVSIIMENMNAEVVCGDVEPIVVSGDLGG*
Ga0068876_1000770120	F091921	GGAG	MIEMRVVDNGPMCRPEIQYRFMLFSIGQGGYLCPPNEDMKWSEWRTAPYVKAEDT*
Ga0068876_1000770125	F008943	GGAG	MKNFEEIDWAVLSVFFIIIVAATSITYSEQQQRALFQQTYNKNLECRQALKDQTVGRITDICGTVPVIGDFVK*
Ga0068876_100077014	F072267	N/A	MTEKIGYKLNPKKLKKAPQYITPYLFLGAFYYTEDYEYFDVIKPYLDIPEKPKTLEEISQELDEKIDDLIERTKNSFYKSKYIAETLYDTKFNRIIENFEYAKEHGQFPSKLTYSNLIATGSNITSSLVIKSGGKEVGYYTFGNGYLKYYMNKKPTAIVRFFMKNCLSIRWVDEKND*
Ga0068876_100077016	F030059	GAGG	MNSKLKENLTLIQDVANKALELHKNSTKKFNGVNYADLRVVDVWVKYSIHEEDLEYGVLIEEASPTAYDLQDYMLEYLKDNLTNNLGWSIYVECEW*