Scaffold Ga0068876_10003123

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10003123
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11999
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y
F073468	Metagenome / Metatranscriptome	120	N
F093875	Metagenome	106	Y
F105046	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_100031231	F010155	N/A	VYGQTPFSTTPQMFVIIGNITEVSDNTNHSFGNDVEVVIDIYSEQYMVYDNSIVDNIASQILNLLIPTPNVNGFSDANFLVYPTARTSSRYLSEVDGQNFFARKIITISNLVNQK*
Ga0068876_1000312310	F093875	N/A	MIPEFNLPAIRQGDTYILPLSFWEDECETVVIDVTTYVFKLMAKNSAGATQFTWVNADFVVGDPNERTVTLTSVTTAGYTAGEFSYDLQVTTATGTYTWMQGFIQVNSQITS*
Ga0068876_100031232	F011844	N/A	MAQILGSTQNVEIDVAGGTSYKNLVCLRTSSVNTTMDATTEQTNCGVLTSPSEPQMSTDFDAICETAPTVSQVSYEDLLAAMVNKTLVAVRVQNPVVSGSSAGAAYYHAFSGYITDLTLNQSSTEFINFSGTIQSSGALDVVA*
Ga0068876_100031234	F004112	N/A	MIQGHQEKKVDTYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEQEKPTDEEYREVFNRLTKWQKTIVP*
Ga0068876_100031238	F073468	N/A	MKEMLENLKTSLFGAVAGLPMIYEGAMAQDWKLVLAGIGMLLVGIFAKDSK*
Ga0068876_100031239	F105046	N/A	MEQGVIVTIIIQTIAFAMALSKMFTDMKIKLRELDLRVRTLEKKEDEIGEKLGKIFDALQDIKLELKDKADRL*