Scaffold Ga0068876_10001128

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10001128
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21037
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F009071	Metagenome / Metatranscriptome	323	Y
F020144	Metagenome / Metatranscriptome	225	Y
F099268	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_1000112836	F009071	GGA	MPFFPDCYDEWGLYKFTYDGDHKMYEMLFEGTEEECRQYAYDNYTDKEQTNMCLMDWEAREWSV*
Ga0068876_1000112838	F099268	AGG	MRLIDRYNEYYNDECAAAPWGSLTSMEHLQATTIRAVLYAFARKYNMKESISVEDLNNLADLIEEQGNESNKRHETVMKVAQEHSTDAT*
Ga0068876_1000112839	F020144	AGGA	MPFYTKLPGTDVLRSKIDVFTMSDPDDEKIFHRVELTVDNAGVFITSCEGGAREDMSIAQKDLAIAVARAILEAYGEV*
Ga0068876_1000112840	F004208	GGAG	MTYSLNQEAKAFSYTREELFKCITNIVAHPHKTITEHDQSRALAIMVVIDDYYTNYVQSDNNGGYCVYECDATDLTDFVRFKLGIGDYDAVDVYEVLK*