Basic Information | |
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Taxon OID | 3300005527 Open in IMG/M |
Scaffold ID | Ga0068876_10000498 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32138 |
Total Scaffold Genes | 78 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (57.69%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Ohio, Lake Erie | |||||||
Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000744 | Metagenome / Metatranscriptome | 909 | Y |
F004208 | Metagenome / Metatranscriptome | 448 | Y |
F004546 | Metagenome / Metatranscriptome | 433 | Y |
F004898 | Metagenome / Metatranscriptome | 419 | Y |
F005478 | Metagenome / Metatranscriptome | 399 | Y |
F020347 | Metagenome / Metatranscriptome | 224 | Y |
F046343 | Metagenome / Metatranscriptome | 151 | Y |
F081279 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068876_1000049823 | F005478 | GAG | MLQYTRTQDLDELMYDDYDLDYTFSNDYNLDEDSYYEHYAQLDVVDLDEEYTRDTQDYDTLAYRHYA* |
Ga0068876_1000049831 | F000744 | GGAGG | MTDANVNLNVHEIGVILSALQLLTNRDENQIAKEYGSAPALYNKLYSVWETLDRSETGLRNDVVPSY* |
Ga0068876_1000049842 | F004898 | GAGG | MDLSEILDEIREIEIYDVDPKDWMGYMKEDDSWDPVPELAY* |
Ga0068876_1000049846 | F046343 | AGG | MTLAKTGSEVLTKEEWEELIALKDAITYAPQTVSAEKMEKFAELMVRSLEGKEDNTPR* |
Ga0068876_1000049852 | F081279 | AGTAGG | MKSNPYWFLEKWGITDSVPMDDVYDRLTQLEDRVRVLEEENIGLTNALYEMENSLDARIDILAEHCRIIPDV* |
Ga0068876_1000049857 | F004546 | N/A | MMDYTEEFPFDQFPWKLIHKDGKETRKCYFQSEEHRKKHIDRYKLNKKDIKLSYKYDD* |
Ga0068876_1000049863 | F020347 | GGA | MSSKTYLQYVAIPALAFFISAIVSYNLTPERTPQHTSTVSGSSGDLVCTSSCKVKDQ* |
Ga0068876_1000049867 | F004208 | N/A | MTYNLNPEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAIMMVFDDYFTNYTESDNNGGHYVYEQDAIDFISFVRFKLGIAGLPDGIDVDEVLK* |
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