Scaffold Ga0068876_10000021

Overview

Basic Information

• Taxon OID: 3300005527
• Scaffold ID: Ga0068876_10000021
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115823
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (18.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010082	Metagenome	308	Y
F011227	Metagenome / Metatranscriptome	293	Y
F062693	Metagenome	130	Y
F065704	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068876_10000021100	F010082	N/A	MLSPRLTNCIECNTITALLAEIDCKVAELAKNEYNNVVFALNYPLPGTVLDDLLNYKRILRFKYCNGSYGAPFTLNQIASRVKVLIHK*
Ga0068876_10000021120	F011227	N/A	MELVELKAKAYDIISQIEYLQKLLQETNQQIAVKIQEQEAMKGGE*
Ga0068876_1000002130	F062693	N/A	MKSKIILDIEEDELNLFNKQYLSLPELHEEIESLFEQGEKLDKRKKKQVSEWKEKINFLIDMYNTKSKFKTYNKVK*
Ga0068876_1000002162	F065704	AGAAG	MGANWFRTYGMGNSVRDAYNSAVEDANYEHGHQEGYSGEINSSAGFRDVTREFKASGKSLNEYIDGQQDKLTKHQGAQAICIQEPKSNTNKIKTQVEHIVTPGTKKWVLMYVVYCSEDRVMSAPTKGEAVKLAREYSEKHQCTTMIRMERVLEKKDHALVAKVTYKRASDEREGKWLFFGWAAY*