NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068877_10149651

Scaffold Ga0068877_10149651


Overview

Basic Information
Taxon OID3300005525 Open in IMG/M
Scaffold IDGa0068877_10149651 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016254Metagenome248Y
F087086Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0068877_101496511F016254AGGMVGKEIVVGKKAAKPRLRAKPEKGTRMILSDDRKREALEAAQYGMPIERIAILCGFPSGNETQWARWINANPEFQRELDLARARGELTLQRRVASADTGWQAAGWMLERTRGYVARASLEHTGKGGKDLSISGALLGAFGNTK*
Ga0068877_101496513F087086GGAGGVKYRLGFSLVASFSGEHPMLERWGSHEVTLSDVIRHWPGSEVEPSEPFDSEYNYLAKEGPIPRAILDRLDDVRGETRFQICRKLKEKFPREAFWACISDVQMSGIFDRKTAFGFLDSIGASFDTSNTMGTIGGPLGHWCPDFAFNVESQVLISSIRITPVLCAVSESGELEPVRPPSEWQWDRFADLFKRFDCFDLARQGRAIEAD*
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