Scaffold Ga0068877

Basic Information
Taxon OID	3300005525 Open in IMG/M
Scaffold ID	Ga0068877_10051401 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005525 Open in IMG/M

Scaffold ID

Ga0068877_10051401 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2716
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2716

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018160	Metagenome / Metatranscriptome	236	N
F024098	Metagenome	207	Y
F044982	Metagenome	153	N
F075860	Metagenome	118	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_100514011	F075860	N/A	MSVTLIAYPTANFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNGMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGAASSGYVYGVVDAAGFTDILNQGGGWFQAPWWRLGPSIY
Ga0068877_100514012	F024098	N/A	MSISVLSGSPLVATPVYNKMLFKVSGSLIAQPNYRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPTLTQTGFVDHSGFYSGYRLDFTQEYGNTPSVTGATTTVSGVMAFAGNLEQLELAGWSGGLYFPAGGGFADAVSRSLATNVRRTVYSDSYGWLCQGVGSGFANTQNIIATVTYYTAGGASARTYNVSIGSASGSTIFRFGAGPLNITALTSGQCSDGSAGSVNFPTAEGSYYTIFFADDGGNGTVPFTYVIGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEIAVAYDNNIL*
Ga0068877_100514013	F044982	GGA	MEFDVFVGGSGKKLTDFQKQALPDFGVNLADGAIDNKSYAVVKKWLEGVITLAKQNLANSGAIASDSLSASIDFEPITLTDTSFVVAIVANDYWKFVDLGVKGAVSSSRAPNSPFQYRDKRPPIRPIQEWIAFKTIPLEGRDKKAANRSFAINIANKIRREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR*
Ga0068877_100514014	F018160	N/A	AGYGWLMVVWRMANKDVLKFEAIFAMKAVEFLNYALLIHDILEAERMEAERMRRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068877_10051401

Overview

Ecosystem & Geography

Associated Families

Sequences