Scaffold Ga0068877_10006973

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10006973
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8559
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F006262	Metagenome / Metatranscriptome	377	Y
F010611	Metagenome / Metatranscriptome	301	N
F019637	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000697310	F010611	N/A	MTQRAYAEHAGLSHGYVNYLMKKGMPMDSPEAADAWRAQNIRAKNIRRPTDTISEEGTAVEQEGPYRPAEASTPIDTATAATDSPEGAYERQRQIERAAYDLAVEALRQRRADAGRLVAIHAAAAKNLTSARDEVTVQAEKERRLVSGDWVKRVMQEHDGAVASLLKAMPKQLSGRIAPHDPEHAERELNRWVQEVALKTLHQTDPWKS*
Ga0068877_1000697311	F019637	N/A	MHPNSLQFLIDQYGLANTAWFIRLMKRGTSPEQLAGYCVPDPRDSRRDGVFRALQYAASVPDSALPENIRTALRP*
Ga0068877_100069735	F005633	N/A	MRIATTISVDKNGKTKLVSGPDVDATLQRDGFNTATVPEGGKLILWIQGALAPKIRKG*
Ga0068877_100069738	F006262	N/A	MVRAVFTFTVAIKRAYLRSVYAALTGTTLLAALTSKVIAAASVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLNDYDLAVYYLGQDGISSPTDTQIYNKMLSVVLIAATSFGGDFSNFRREGTIRTGMT*