Scaffold Ga0068877_10002213

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10002213
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15860
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003459	Metagenome	485	N
F003660	Metagenome / Metatranscriptome	474	Y
F006105	Metagenome / Metatranscriptome	381	Y
F009318	Metagenome / Metatranscriptome	319	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000221312	F003660	N/A	MTHETKTKLKAAVATGYIVLTACLGLAFFGRFVLAIITL*
Ga0068877_100022132	F009318	N/A	MRRFLLLFLLTACTNNRPWKVIEVRPKGDACEYVLSRSNGFGPQVKNITAKCGKYRLFQTINPKSK*
Ga0068877_1000221327	F006105	AGG	VIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNATTDFTLLKSANLSSYTNRYDKFQIAVGPLETGSYKYEVYDTSSTISAAVAVVETGLAYVQVVSLTFNTYANSIQYTVFGASDERVFDSTFDPSFA*
Ga0068877_100022139	F003459	N/A	MNHLVTIPKSDISKADIADIATGLILRIEEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEAEKHGKTFSAFGAEIQVKEGALTPDYTHDQVWSDLQASMKAREELLKMAFRNAGKATVYDESTGEAVPVCPAKGTKPSIAVTFKAS*