Scaffold Ga0068877_10000248

Overview

Basic Information

• Taxon OID: 3300005525
• Scaffold ID: Ga0068877_10000248
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46445
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015072	Metagenome	257	Y
F019289	Metagenome	230	Y
F021066	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068877_1000024836	F019289	N/A	MGGIHGGDEVSHPDTPREPLSDAYLQQCEFDARKFSGCWDQGTSGVLAAHVMRLLFELSRVKGKLAVTIAQRDERPDLSLIRGD*
Ga0068877_1000024843	F015072	AGGAG	MNSEMMPGDAEYHGAVAAMNETYGGRGVIRDGKLTTTYAVGDRIKWHEAGELLAGVVVEVLTDDTYHVRRHVPDRGSLHYAVTDAQAVPF*
Ga0068877_1000024876	F021066	AGG	MQAILRFDCSDPDDAREHRYCLAGRDALIALEAIQQAIRGRLKYAEIGDEATRELEAVRELIPHELVELLV*