NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066862_10176470

Scaffold Ga0066862_10176470


Overview

Basic Information
Taxon OID3300005521 Open in IMG/M
Scaffold IDGa0066862_10176470 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051453Metagenome144Y
F072735Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0066862_101764701F072735GGAMWVRWLLICCFIFIGTLCIAQPFNGTNQTPAIHNSYQIHNDKDAYKTEDILLLFKSCYETIYFLGNTKYKRTKKILKEETVSRQCFCICDKVRAKYKPKEFLDRPPIEIHNIIKPLT
Ga0066862_101764702F051453N/AYPDIKSGSVTKEVIVNLRTPSEEEVEVPEYIILEDSTDFTTNYLILNADAGSPNATGIMKFITEESSAAVGSAGIKSRLTVSPKPGDVTANDDFGYTESFEYFDDNVDVNVTTGLDVTL*
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