Scaffold Ga0066862_10056820

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066862_10056820

Scaffold Ga0066862_10056820

Overview

Basic Information
Taxon OID	3300005521 Open in IMG/M
Scaffold ID	Ga0066862_10056820 Open in IMG/M
Source Dataset Name	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1371
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location Name	Pacific Ocean: Eastern Tropical North Pacific
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047369	Metagenome	150	N
F069360	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066862_100568202	F047369	N/A	MKQLLTEWRKYVLTEGMKTAANLPQGSAIAIKSRGTNPMFVYTYGGKPLYDKPNPRFNPGVPEGAPWGEVLIGKLKPNSQGDCSDAYGVDHSDTASGWGPLLYDVAMEWASKNGSGLTSDRGSVSKDAFRVWEYYLEKRPDVESVPLDIRNRGYEKITPDDESDDCEQAISVKYARDTNSDPKWGWSAQPTAYLYRVSGTPTMDALEASGQLLEPEHE*
Ga0066862_100568203	F069360	GGCGG	MKEADDFDWDAFGFSDEERGEPEGRSSHYDDLVGLDRGDTFTIGNRKPVYRVIGALTDRGEAKGSQTKLVVIDGSAERKTYEIRTTGEDYEVGAFGKDENNEHTILVGKTGFVMNITKPAGTKN*

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