Scaffold Ga0066862_10001863

Overview

Basic Information

• Taxon OID: 3300005521
• Scaffold ID: Ga0066862_10001863
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8675
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F027831	Metagenome	193	Y
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066862_1000186312	F077161	N/A	MRNLSVASIQERFDEHKKLHRFEVDKLFEKIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDMVTGKIEKVQDAITKKDISKAVHEQSFNFDERLLQTLSWNMKQAHHVIGHFSTKFDNPYFRSRCLFTKQYDLIPDYGYQFYGDTWRMMKTSMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWQKSMDYIIDHCVKDVKMTYEGLLKVEQFNNIGRTKA*
Ga0066862_1000186316	F027831	N/A	LPKKLSGIAYGQRTKQKGQSDLTQLITLRRFLKNRFHMDFKREWYVGFDKEYGFICRISEQVSKKELERFRWKNPDLLCIHRKHGLVIVELDGAIHDRKVAKTQERNELFRNGGIKLIVLNISDIKEVGDTIINRLERDMLELLQKT*
Ga0066862_100018635	F011190	GAGG	MIRQSIHNFIGGLKKSFSGKDYLRNINQCNKCGKPSFFASCLKCEVDDAYRGYKYTK*