Basic Information | |
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Taxon OID | 3300005521 Open in IMG/M |
Scaffold ID | Ga0066862_10001863 Open in IMG/M |
Source Dataset Name | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8675 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (47.06%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: Eastern Tropical North Pacific | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011190 | Metagenome / Metatranscriptome | 294 | Y |
F027831 | Metagenome | 193 | Y |
F077161 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0066862_1000186312 | F077161 | N/A | MRNLSVASIQERFDEHKKLHRFEVDKLFEKIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDMVTGKIEKVQDAITKKDISKAVHEQSFNFDERLLQTLSWNMKQAHHVIGHFSTKFDNPYFRSRCLFTKQYDLIPDYGYQFYGDTWRMMKTSMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWQKSMDYIIDHCVKDVKMTYEGLLKVEQFNNIGRTKA* |
Ga0066862_1000186316 | F027831 | N/A | LPKKLSGIAYGQRTKQKGQSDLTQLITLRRFLKNRFHMDFKREWYVGFDKEYGFICRISEQVSKKELERFRWKNPDLLCIHRKHGLVIVELDGAIHDRKVAKTQERNELFRNGGIKLIVLNISDIKEVGDTIINRLERDMLELLQKT* |
Ga0066862_100018635 | F011190 | GAGG | MIRQSIHNFIGGLKKSFSGKDYLRNINQCNKCGKPSFFASCLKCEVDDAYRGYKYTK* |
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