NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066862_10001863

Scaffold Ga0066862_10001863


Overview

Basic Information
Taxon OID3300005521 Open in IMG/M
Scaffold IDGa0066862_10001863 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8675
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011190Metagenome / Metatranscriptome294Y
F027831Metagenome193Y
F077161Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0066862_1000186312F077161N/AMRNLSVASIQERFDEHKKLHRFEVDKLFEKIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDMVTGKIEKVQDAITKKDISKAVHEQSFNFDERLLQTLSWNMKQAHHVIGHFSTKFDNPYFRSRCLFTKQYDLIPDYGYQFYGDTWRMMKTSMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWQKSMDYIIDHCVKDVKMTYEGLLKVEQFNNIGRTKA*
Ga0066862_1000186316F027831N/ALPKKLSGIAYGQRTKQKGQSDLTQLITLRRFLKNRFHMDFKREWYVGFDKEYGFICRISEQVSKKELERFRWKNPDLLCIHRKHGLVIVELDGAIHDRKVAKTQERNELFRNGGIKLIVLNISDIKEVGDTIINRLERDMLELLQKT*
Ga0066862_100018635F011190GAGGMIRQSIHNFIGGLKKSFSGKDYLRNINQCNKCGKPSFFASCLKCEVDDAYRGYKYTK*

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