Scaffold Ga0070374_10276614

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10276614
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 854
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015463	Metagenome / Metatranscriptome	254	Y
F068762	Metagenome / Metatranscriptome	124	N
F082074	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_102766141	F082074	N/A	MKAYIMLIMLLQLDPMDGLPYTTALQQYPLVEYTTLQECEQAAELKRTEMLKSSRQYLDLVIVNIVIECVDSSLADFNSTDIVI*
Ga0070374_102766142	F015463	GGA	MQSNFYLKWSACVVTLAGAILTSLRIDPQNIYLLNLGAILYFVWGYRIREWNLIVINAGFIVIYAWGIYLS*
Ga0070374_102766143	F068762	N/A	YAGIRERLHEIMIERHADPLQGEIRRAMAEELLEYLHASEEGLKTMTDYKQQWTRGEDAE