Scaffold Ga0070374_10130906

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10130906
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1304
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_101309063	F000441	AGGAGG	MRMSDEYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDRVEQVYN*
Ga0070374_101309064	F000852	AGGA	MTTKREYLKAQGIAVGVRGRFSGAAKVALQEAAAKGITFAAETPVKKAK*
Ga0070374_101309065	F022414	GAGG	MSKTQEIKVAELLVNLTDDHWFNASIFGRYLAEQPLYTSDRIMEMVAYIVHEQAKMHITNSIRGTSSEGLLLANELNECIKAYREVTVINNLRLPAPVSYTIKREEQPKRIQFGWREDKEPFQ*