NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070374_10046016

Scaffold Ga0070374_10046016


Overview

Basic Information
Taxon OID3300005517 Open in IMG/M
Scaffold IDGa0070374_10046016 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2267
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F015702Metagenome252Y
F018135Metagenome236Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0070374_1004601610F001477GGAVSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Ga0070374_1004601611F044984GGAGGMTDEIKKRVATAKRKNVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANAVPDVAGRTDY
Ga0070374_100460162F018135AGGMTIERVAHSGAYVLSQFVGKGAGEYLFTRTYYGYTMAQAKAQFKIAIKEEAK*
Ga0070374_100460168F000821AGGGGGMNEEYFAAKANLCLNQAEKDLKQEEIASAIKNLERANSALSRLFGLKEEDND*
Ga0070374_100460169F015702AGGAGGMIREIELEYTVHNLVRLSRKVWGENATEYLAGRLESIITYNQMKVLIDSLKGEAGE*

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