Scaffold Ga0070374_10046016

Overview

Basic Information

• Taxon OID: 3300005517
• Scaffold ID: Ga0070374_10046016
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2267
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F015702	Metagenome	252	Y
F018135	Metagenome	236	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070374_1004601610	F001477	GGA	VSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Ga0070374_1004601611	F044984	GGAGG	MTDEIKKRVATAKRKNVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANAVPDVAGRTDY
Ga0070374_100460162	F018135	AGG	MTIERVAHSGAYVLSQFVGKGAGEYLFTRTYYGYTMAQAKAQFKIAIKEEAK*
Ga0070374_100460168	F000821	AGGGGG	MNEEYFAAKANLCLNQAEKDLKQEEIASAIKNLERANSALSRLFGLKEEDND*
Ga0070374_100460169	F015702	AGGAGG	MIREIELEYTVHNLVRLSRKVWGENATEYLAGRLESIITYNQMKVLIDSLKGEAGE*