NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066866_10155616

Scaffold Ga0066866_10155616


Overview

Basic Information
Taxon OID3300005514 Open in IMG/M
Scaffold IDGa0066866_10155616 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000563Metagenome1022Y
F018527Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0066866_101556162F000563GGAMKYKFKIREEGKEDEEKEDMSFKKILKSLVSTNPKWTGFLHYTNKKGRPVTHDILNGKKI
Ga0066866_101556163F018527N/AMIDKLIERNDKAFQETKEKLEKLLALETTTPEEYRGGLYEKIEKVVDALSVFHRRGGFYEFKKTNNNKQ*

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