Scaffold Ga0074648_1012461

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1012461
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5433
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003835	Metagenome / Metatranscriptome	466	Y
F019559	Metagenome / Metatranscriptome	229	Y
F045652	Metagenome / Metatranscriptome	152	N
F061284	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_101246110	F061284	N/A	MNYEDYERFEELAFDHLLKRYGWQIHTTPRYALIDGVATKNGEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEISRVMCVPFILIVYLIKDGVVIGIELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL*
Ga0074648_101246111	F003835	N/A	MKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGDVIAIKKYRKTAIEKRFESNT*
Ga0074648_101246112	F045652	AGAAGG	MDQFNKLIRGRGGRRAQCKHCDRQYSEQRGLKVPQEPSEYKLTKQTMMNHMYIHFGWWESKMTTIERDQQRRDLRKYYKEEQQTNIK*
Ga0074648_10124613	F019559	N/A	MNEEAFNKLMGYPLDEVKRLADLLKEINRNRIVELNQRDLKQNGIEND*