Scaffold Ga0074648_1004984

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1004984
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10362
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F005591	Metagenome / Metatranscriptome	395	Y
F067760	Metagenome / Metatranscriptome	125	N
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100498412	F005591	GGAGG	MNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIQIITRLNKEQKKQVLDELWEDLQSAIQFTRDRNNARRRQKRLDKNNQT*
Ga0074648_100498416	F087019	GAGG	MIGEIIGLAFVTVFMLFCLIGVTFLIADRHYDKKRKDN*
Ga0074648_100498417	F003051	N/A	MKTKILKNKVTIDMSVSEYDTIFKYIDKLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK*
Ga0074648_100498419	F067760	N/A	MKIRRIDMYIMNRYKNYCDEALRYKEFQKTFQAWKEDNIIELVKEYKDYRRLDRYGSQV*