Scaffold Ga0074648_1002590

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1002590
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16170
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034398	Metagenome / Metatranscriptome	175	N
F039049	Metagenome / Metatranscriptome	164	N
F040080	Metagenome	162	Y
F052272	Metagenome / Metatranscriptome	143	Y
F061813	Metagenome	131	N
F073281	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100259010	F040080	AGGA	MKTLTEFKNDLGTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRAVDDIKPRQEDRRVFSSHYRMLAILNDYGVMHREHIAKLLGVKDQTVMQMLHVCRHHKLADLKTRRGVVSLQSLADGVSDNTNFKI*
Ga0074648_100259013	F073281	GAGG	MRPRTICHPEALADWRANDEDAHSYLATVQEQINIGRTQDELDNNTLSEKQENARRLSIRGLEEAIERENRKRGTVRKEGEA*
Ga0074648_100259014	F061813	GGAG	MMTISRNENKTRVDRLVYKQVTETLALVKQASETLNDTGDVESDSLDNASSHLKCVIDMLDHYLRANA*
Ga0074648_100259016	F034398	AGGAGG	MIAEQYRNISPHFAYEDDMPLAIRWSCILLDQDTENPPFEPARYFVVNVFAGTKDAVLDCLGEEYPWCDIMYVDKALGGHTDDDFLESWLHHFDAREAVPVREAPHGGDYAHN*
Ga0074648_10025908	F039049	N/A	MNLLPKKKSRELSDQQQAFLTALFENGGNFSRACEVSGYSQGSIGHLKESLADEIIEGARNILAGGALKAANKLVRTIDAPEIERGDNIRLQAAESLLNRVGLGKQETHNVNVQAVHGVVLLPPKKEMVVDTQ*
Ga0074648_10025909	F052272	GGA	MKTETTLNFTAEQLNELKRIVDTIGWATRNDETGHIDAYVSETRMKFAKDLAGVLGRMDTAAIVGSSEGI*