Scaffold Ga0074648_1002094

Overview

Basic Information

• Taxon OID: 3300005512
• Scaffold ID: Ga0074648_1002094
• Source Dataset Name: Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 18768
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050345	Metagenome	145	Y
F052476	Metagenome	142	N
F078422	Metagenome / Metatranscriptome	116	Y
F087123	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074648_100209420	F087123	GGAGG	MELYFKSEKLNQDVQWIWTDMEKAYWQTWIPKKSNLKILSKLSKDEMQLAKDELWDNLQDSIQFTRDQINFKKRQKRLAKKS*
Ga0074648_100209427	F050345	AGGAGG	MTEHSEKVEARRYQIWKERTDLPSLETRADWDYILKRYPSGKIVKIFDDKRKKDKVIQDGK*
Ga0074648_100209429	F078422	N/A	MELILIVVGFVFIISCVGLYLYLVDEKKIEPMLPPRYMNHGGIEVKYTKEDYDKFDNKDT
Ga0074648_100209435	F052476	AGGAGG	MSNTINTMILENLFDDVLAQDAKGLLDDQVNEIAREQGLHVDDDRDEILGIITNRIFEVKYD*