Scaffold Ga0070698_100022920

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100022920
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6528
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006429	Metagenome / Metatranscriptome	373	Y
F014877	Metagenome / Metatranscriptome	259	Y
F041647	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_1000229202	F041647	AGGA	MQASTANTQHDRGSPVPAVPPELLETVGRALAAALIPLPRQPTPPSVEQAPDFLTAAQLAARLSVSRETVRRLAIAGALPHTVVCRGSRKTTRRFPRRFADDFAASGLDTADLAVFAVQWRARVTAPGL*
Ga0070698_1000229205	F006429	AGCAGG	MTAAPPADPSPRALGESLAALAAQVAELRGQVRVLNERLDQAGLHGDLNLAARFEELAQTVADALDTAAPRGPAAPYWIGLDRDTYHAQLADLCRWADTVLRQHYCGYELRECWARHIHVIWELSTLAAEWHRTYGGTRPDLGRALEFYDRWMPGTMRRITDITRTCMPQCATLSSPGDWTARPRYR*
Ga0070698_1000229207	F014877	GGAG	MTGTTKAGAAGRRTVFAVDEDAALAALDEAWVDGGYHAFSVDHGTWSAISSAGQVLTGSTPDELDRNIRAHWQEMQ*