Scaffold Ga0070698_100000088

Overview

Basic Information

• Taxon OID: 3300005471
• Scaffold ID: Ga0070698_100000088
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72328
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (65.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041678	Metagenome	159	Y
F062619	Metagenome	130	Y
F104094	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070698_10000008853	F041678	N/A	VASDDHRFLVPVVSVAYAVTIGAGLLAIDQLAQSLPGAWLEVLGAAVLLLSVMTIAVLLRAGLRRHREGLKRRGLLWAGGAAVPAVLATLAIFSLVESAQNASLISGADTHLTRPVIESLPRPPGTKLLDERPGLADTETIYQTFTATDLNSIVPYYEAHLTKDGWVEDKASVTTPIVRFAKDAFLLALEITPPSSRYTLTVDHINPTLLQSPSPSPT*
Ga0070698_10000008855	F104094	AGGAG	MEDNSIQRDKPWRPGDYPPLGPSWDEMDPIEDSKPQGVPDGED*
Ga0070698_10000008857	F062619	GGAG	MRSRSPRGSSTPTSRLTSRLHGPLLVAVVVILIALAGFYVIEAFMSPSPLLRIVLRSLPVLPVAIWTLWFEKSRPFERHGPMIRVAGRILLLVLALAFAVAILGIGLNWLYDPGRVI*