Scaffold Ga0070707_100000419

Overview

Basic Information

• Taxon OID: 3300005468
• Scaffold ID: Ga0070707_100000419
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41972
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (55.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025577	Metagenome / Metatranscriptome	201	Y
F084195	Metagenome / Metatranscriptome	112	N
F105763	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_1000004191	F105763	AGG	VGSFVWHVREGSLEGPELASAYRYHPFSVDEPQVGTDDIFLEGAGPWRVIDFQRTDVLESDGNILVVERPNAI*
Ga0070707_1000004192	F084195	GAG	MSAEYDVARQQRLRRALEAIADAYGFTGELRRERIGEWWLYPNSIGYEREQEIAHEHGLEVKFGKEKIDEFRQLVAEAQRNGS*
Ga0070707_10000041952	F025577	N/A	VTATAASASLRTYIVGSKRVNGVGNVGGFSATVNKPYKIILYCEGSKAVCGAKVVCVRGAKTFTWNRSSLGPYTWNLKKPTWYRLDSCHFKTWVKVGFTTGARVTVQATVRS*