Scaffold Ga0070706_100001678

Overview

Basic Information

• Taxon OID: 3300005467
• Scaffold ID: Ga0070706_100001678
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23061
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (89.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000157	Metagenome / Metatranscriptome	1872	Y
F030238	Metagenome / Metatranscriptome	186	Y
F102595	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070706_10000167810	F030238	GGAG	VYEAEEIPAARFLWQPHVYDLVMLDVRRYSPAEALEFYEQITAADPRQQVAFLMGPPRYLSRTWPDEVAANDVSRGQWGETVKRFLAAA*
Ga0070706_10000167814	F102595	GAG	MWIERLLYGVLRVLTPLGPRYLGPSFLERVYLLWTFRNFTSLPLVVLNHRQQKLVDRLCSQQKFVSLAFENDMFDQLLIGTVERLSPRPSQTETQAEGALSGLAASGVFSHSSGA*
Ga0070706_10000167827	F000157	GGA	MNFAPANDISSILSRVVEAKTDYDKRLLAQQLGTNYRSLMYWLRGERPLPAHLLPRLCVLLNNCEVLDFLESQAGRVAFKLPDPHVTLEKQLVAISNLIKEVGEALESVAETLADGVVEENELKATIPKLEGVIQECASLKYVLEDLCKKSRKKRKNWPARTR*