Scaffold Ga0070681_10487642

Overview

Basic Information

• Taxon OID: 3300005458
• Scaffold ID: Ga0070681_10487642
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1145
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. URHB0044 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029539	Metagenome / Metatranscriptome	188	Y
F090221	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070681_104876421	F029539	GGAG	MTIGSGNPMPRGTLWVLAINVAALIAFASGPAAVEYPLAAAGILAVLFAQLGLPACRIQTAAPLCPANIAQGYYWIQLVLVTVLVGHFGFSQGVLPYLPSKDSLNLAIAVQVVGYLSFCVAYQCFSPGTARRDQSRGSMPGTAFLIVPFAVVGVIGFLLAHGGLGGFLDYVSSPIEQRLREEEATTLAGAAGNFLKHFLGFAVVLAWSAWHGRARRRMV
Ga0070681_104876422	F090221	N/A	WRQLLLFLPASFSPVILTMLSNLHGTNDPGAYRRLFGLNLAVSIAVVVIPSIGVMLCAPSAMALFGDEYRQGGTTLVILSASSIAVVLNNLLGQILVSRGAIAGRFALDVLLAGILALASWQLIPVYREEGMALGSLIAFAATSAVLIATTAYLMRKHGSPR*