Scaffold Ga0070662_100450626

Overview

Basic Information

• Taxon OID: 3300005457
• Scaffold ID: Ga0070662_100450626
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015906	Metagenome / Metatranscriptome	251	Y
F018405	Metagenome / Metatranscriptome	235	Y
F021660	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070662_1004506261	F018405	N/A	RAFMNTSDIYRQAIKRTFAGLYGVAPDKVDVSWSDTGDNITVRCADKTFTHETLHDDDEPTLEFVGDGAVTVRLTTAELLRLEGIDGFNGF*
Ga0070662_1004506262	F015906	N/A	MSTGKVYKQAIKRVFAEKYHDERMAVYWGREDDTIHVVASLRHYVHKIAGANEDTLEFVSSVGDCVTVKLTDDERRELIAQSSAIH*
Ga0070662_1004506263	F021660	N/A	LLEADARGSFTFTFSSARGEMSGRVNVGTEGPPDRRSVSDKEQAAKNQILALARELALSIWPE*