Scaffold Ga0068706_1027867

Overview

Basic Information

• Taxon OID: 3300005452
• Scaffold ID: Ga0068706_1027867
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1175
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F001381	Metagenome / Metatranscriptome	709	Y
F053114	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068706_10278671	F053114	N/A	WMDSLLHPAQAMPSVPALRWIVDWLGGIVDYTRLMYMLVDYVAYASIVQQALLAQLTIVTVGLAFRAWLVIRRVVLVS*
Ga0068706_10278672	F001381	GAG	MQYVVATLYVLLWLALAAGAALWLPLWALPAALVQLAVAYVMLRAVWLAAAGGGDD*
Ga0068706_10278673	F000642	GAGG	VQEISVALAICAVAAAVWYMRRREAGAGRVRGWLLLYDDVGGWRVLPAAYGDSGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHRALERARESAALSSLWRGGGQWIDLLRVLGVVLPAAFAYFTWAQVASLQSLVAQILALMGGT*