NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066686_10383327

Scaffold Ga0066686_10383327


Overview

Basic Information
Taxon OID3300005446 Open in IMG/M
Scaffold IDGa0066686_10383327 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033492Metagenome / Metatranscriptome177Y
F046940Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0066686_103833271F046940N/ALTQTKLNVNMFTADLAVQPGDSGSPVFALQGGKPVLIGLVSATMYPTATFTYVARIDPLLALAEALRSATSGQSQSLLVRSPAMTSPEQH*
Ga0066686_103833272F033492GGAMYSIYGKTLGTAIAALWVVFTPTQPVPPTTTANYATLPHPLAAYVALRSPSEQPASVELRVPAALVNTLRTEERSSEMIDLRVPEALLEHLYGAGRVSGLEKSPAPWGEPF*

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