Scaffold Ga0066686_10273605

Overview

Basic Information

• Taxon OID: 3300005446
• Scaffold ID: Ga0066686_10273605
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1144
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015813	Metagenome / Metatranscriptome	252	Y
F053113	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066686_102736051	F015813	N/A	LSTRGRKALLAGLALIVLLTATYAMSAEREGTVLFFSLEDLKQALSHPSLPSLSHLSPSVGWWEQPEAAEQDGPLERNARWGHGLGVDGYAYPGARRPLRGY*
Ga0066686_102736053	F053113	AGGAGG	MWHVITQSGLASAGVDFTESLSLLIVGLVSLVWLSAALIAVMAVQHHWSQTQPRLPEATPDSLDHQRAA*