Scaffold Ga0070708_100047553

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100047553
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3790
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Lacipirellulaceae → Adhaeretor → Adhaeretor mobilis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011415	Metagenome / Metatranscriptome	291	N
F033128	Metagenome / Metatranscriptome	178	Y
F039961	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_1000475533	F039961	GAGG	MMRFVDQIHQAFDETVRSGSLVGVEDLPTRLRVWRAPADTRDRMWAQVIHDYVRGPRAAWATIILEAMCPDLVTTIAAMPAMPPAITHDEVAQQLITELLAAALDGPADPARWSPNRLLSTATKGTYRWLAREIRSLSHSTGDLDRRATDAAGHEIPGLLAELEARSIPSAGLIILYRQEVLGESLAEMAAQSGLSENALRLRRGRAIRRIRKELAA*
Ga0070708_1000475534	F011415	GAGG	VRIAAVIVGDALTTKGFDARSTRERSLGGVKMPLKVKGQVEAVLTRPAGARGFQMRNAVLGSWARTGVVAAILVLILGSIAALGASGRLGDLRYLNIPLVHPWPPAGYYQNPFNPTDRGDIVNASEAAKVKSDLVADGQVELQAYRASDGSSLDGADTGNRLVKLRAALAQNHAAGVSEDFTNQLTSVRVGKLADPNDASVTWCVEEVGTSRITLTSAANGQIIRQYTISFDDKFWMVSVNGRYLITDAEAHAVTVSS*
Ga0070708_1000475535	F033128	GAGG	MRSVLAALAGVILLPSAALAEDPGNDGSTVNVGPVSKGPVVSQGSAGYDPNGITATASTQPTGSGTTSTAPSYTYRPVPGNSVPASCPTTQNNGQISNPCAQLPVSACPSAQTGYYVYDSNGNALGLVCVPNPTDSLLPPTTPEIALADEASSRQPWPVLRLGINPSAGLTGLPSWFWLSGTASMQDAVASSGPLTVRVRARLEGVSWEFGDGLGYDSLDLGQPYPAQSDIQH