Scaffold Ga0070708_100027026

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100027026
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4919
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016727	Metagenome / Metatranscriptome	245	Y
F022492	Metagenome / Metatranscriptome	214	N
F101809	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_1000270261	F022492	GGAG	MAGGLIEGAGLRGVMRLTWVEDHLAHVLDHCETDEPSGAWTGLACQDHGLALGGDVDNATLRRLSAHGEIADLIWEPRGELVAEHGQLLQAAIQAGQDGKPKTGEQLWQQVQAIWSVAWSANYAALKFLQDA
Ga0070708_1000270262	F101809	GGA	MMTEHLGTRPGTVTKHVSDACADLKKALPELAIADDPGGDTAGGEEAP*
Ga0070708_1000270263	F016727	AGGAGG	MSPKDDAGTEREQVPPSAVYRQLDDHLGPEEAPYDAESGLQRLRGWMGDEEPPDEARPQVEPVSETERLRLAGMKLDAVERLAQKRISNARLALGAVVLVSVLAGLGLLFRLSYVPARVAMPVLVAIGAIDGAMTLAVVALYRTAMRGLHDDLRLAFGEQAGRREKPDGAGQEATRPAARRRGGRPLVVRSGGGTYPPLLKFLATIAFLGFAAACVVAYARDSLVPFTITSIVLAGLFLISVLPVVIPAIWAGEAPRRAAQAILYVMLGGQPVSYGDITARHAETAELPLADDRKAGSTTASPRE*