Scaffold Ga0070708_100000230

Overview

Basic Information

• Taxon OID: 3300005445
• Scaffold ID: Ga0070708_100000230
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41818
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (65.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015810	Metagenome	252	Y
F018131	Metagenome	236	Y
F023141	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070708_10000023017	F015810	GGAG	MKAILGSVACALLLFSGIAAAQQVNGTLVANGKSAVLKYVVAQEVDSSTEKGYMDVIVVLSDRKVGLADARNIERLEAMTRNDGLAGLVVRLNPDAKIMSAEPLHPAFTTFLSSAAFVRWKPSAYDEKRVAGRFWTEGTQSEFRQQWSYDATFSAPITLDPDAKTVRKN*
Ga0070708_10000023026	F018131	GGAG	MKENYQKEIDLGRCGAVTLHVSKDGKRLLLEFATEPDGLDKTGLNYFIDALKKVRDRMDR
Ga0070708_1000002307	F023141	GGA	MKEIAAVLTTAGGSRTERLAAQRAFLQRRNEIWRDMQEGKFPDSYVSTNNRKFVGAPRKTAIRCDFLLASRIALGPKYPKDRISDLAQRELLFYVLRDREVFPNRTGKKFYCCPKCTSKLHECVSSKVFRYIDNAKWKAEIESGRSIR*