Scaffold Ga0070694_100274381

Overview

Basic Information

• Taxon OID: 3300005444
• Scaffold ID: Ga0070694_100274381
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1283
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_66_6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052906	Metagenome / Metatranscriptome	142	N
F095243	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070694_1002743811	F095243	N/A	FKTGYWTWMTGGGETNGLSMVIFDSEENARAAGDRVSAIAAAARDDVTLDGVEVREVVASA*
Ga0070694_1002743813	F052906	AGGA	VAWFGTRTYVGASWIVMAAADGSMTWTEITASNPFPNTIALALSFRDANGAPDGRFFATRTLAGMTQTTFLVRNLTVPNSTTGWFTLTSSPTPIVPMAVIYWALAAKNQTEVYNVPIEQLDAEGFPIGDAAAQPRPPAKLDWHPPLATELLAAAGASDEHARAVLEFFRAAQSEPGSLDAAEPFTYSVGLLLDDEATEFRSGPGGVPER*