Scaffold Ga0070694_100000009

Overview

Basic Information

• Taxon OID: 3300005444
• Scaffold ID: Ga0070694_100000009
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93486
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (71.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F009773	Metagenome	313	Y
F013685	Metagenome	269	Y
F035446	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070694_10000000924	F013685	AGG	MSTFKHIFLGVLIGLVLIPSTAQAQFTVFDPAQYSLQIERQIEEANRWLERVKQYSEEINKLAEQLSTMKGVLGQAEKLVLHNDTLTRTMAQIGQTVRDVFQLKRAIETMIISRLNMIKSMKTRLMSGIFDPDADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQTAQARQAGAAAEMKQAKDKLDAELAKPQAEQCAQCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKRYNLTMEERVRIANQVKATDEAWNNLNIVKDSIFDAIQQGGVPSASPSPHP*
Ga0070694_10000000926	F009773	GGAG	MRARPVRPNIYLPVVRFGVADSDWFSVLLISCTGYLAPVPFGITILYVPLQMWTWLIATAGSIAFFNYIRIGKQPRWLQHKVAALILHHKQNRAIPNGRKPRFHRYWIIKDGLDDPPDCIEQLQRTTSGTFLVKHNTHFQEESANQWNSLLLTTN*
Ga0070694_10000000927	F002416	AGGAG	MNNLIAVTNAPGLENSGAAKMGRKLIALAFAVKTFNGPVAAALMILIGVVSASAQTPTGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAYGIVTSGLKESLSTWKFITGAACFAFGGVCAAIYAFAQGDTVPLDNQF*
Ga0070694_10000000933	F035446	GGAGG	MRARERRNIWPLVSVAAGAFFILVIVPLILHRGQSARMATVEPQVSIGNMGIDPSAVDITPVYRWPDSEVPRTAERLRDVTAVAVAACTYVTEGAIKGRAPHDIGEIVAAIVKRQLIPAEWITNQRGVLQMPRGTIHLRYSPDHLQIEVVSVPNKRTDGPAILIRIPDPENPNDGARYFESTHLDGIIYPDPFTPIAEIVTSGWQPRNYQQSQLPDDQRAEVERWANSQPRR*