Scaffold Ga0070713_102425598

Overview

Basic Information

• Taxon OID: 3300005436
• Scaffold ID: Ga0070713_102425598
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 507
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus boritolerans (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.4774
  • Long. (^o): -85.451

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002536	Metagenome / Metatranscriptome	551	Y
F007187	Metagenome / Metatranscriptome	356	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070713_1024255981	F002536	GGAGG	MGDSATGVASVDFALIGHQECWKAAADVLAVLRGPDYPPLPDDEIKDILPWIPPRAICHVDVGSITGAAARGLYIDSFIPPGRLEAVCMRDNLARVRGAASYAIKAG
Ga0070713_1024255982	F007187	N/A	TTLAEMLARECVHGHCEVCHGSCVKPSLFDISLSAAELRGASLQQYLKTLDVLGLPGEVTLQWVTQLPV*